VISDB Viral Integration Site DataBase

VIS ID

TVIS10019392

Fusion event

HBV-TRAPPC10 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr21

Cytoband

q22.3

Reference genome

Start

End

45441052/44021171 (Hg38)

Location type

Intron1

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-330-5p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-193b-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-4713-5p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-4762-5p ; hsa-mir-4753-3p ; hsa-mir-130b-5p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-1233-5p ; hsa-mir-1249-5p ; hsa-mir-1294 ; hsa-mir-1321 ; hsa-mir-149-3p ; hsa-mir-202-3p ; hsa-mir-3921 ; hsa-mir-4278 ; hsa-mir-4316 ; hsa-mir-4419a ; hsa-mir-4458 ; hsa-mir-4468 ; hsa-mir-4500 ; hsa-mir-4510 ; hsa-mir-4653-5p ; hsa-mir-4682 ; hsa-mir-4685-5p ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-4728-5p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-503-5p ; hsa-mir-5088-5p ; hsa-mir-5698 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6732-5p ; hsa-mir-6785-5p ; hsa-mir-6794-5p ; hsa-mir-6797-5p ; hsa-mir-6805-5p ; hsa-mir-6825-5p ; hsa-mir-6837-5p ; hsa-mir-6870-5p ; hsa-mir-6883-5p ; hsa-mir-7111-5p ; hsa-mir-760 ; hsa-mir-98-5p

Nearest miRNA

hsa-let-7c/Upstream/411182; hsa-mir-6815/Downstream/1457095;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/8074, chr21-CpG: 103/Downstream/85904

Upstream sequence

GTAAGCTATACACTAGAAATTTTTAGTATAGTCTTATTCCAAAATTAAATTCCTATTCTGAGAACTTGATACCCAGCACTGTCTTTGCTTCTCCTGTAGT

Downstream sequence

CTGTTCTGTCCTTTGGGGATCCTGGGTTGTCTAGTGTGGAGTATGGAGGAGTTGGGCTGTTttcatcagtgagcaaacatttacggaggacctattacat