Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019394
Fusion event
HBV-UPB1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
Start
End
24900694/24504726 (Hg38)
Location type
Intron3
Target gene
Nearest miRNA
hsa-mir-1286/Upstream/1618258; hsa-let-7a-3/Downstream/950920;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/9152, chr22-CpG: 108/Downstream/50104
Upstream sequence
ttttaatccactctaggcactcagtgggttcttttagtctagaaacttgggttctgaagctctaggaaatgttcttgcattatttcattcattattttcc
Downstream sequence
tttttttttttttttttttgatacgtggtcttactctgtcactgaggctgtagtgcagtggcacaatcacagctcactgcagccttgacctcccaggatc
Target sequence
cctctttttttctctttctagacagtcctactattaggatgttggaaccctggactagttccctaattttgttatgtatttcctccttt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.