Basic Information
VIS ID
TVIS10019396
Fusion event
HBV-chr22 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr22
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
26919982/26524016 (Hg38)
End
26919982/26524016 (Hg38)
Nearest miRNA
hsa-mir-1286/Upstream/1068305; hsa-let-7a-3/Downstream/31196;
Nearest TSS
ENST00000624155/Upstream/11461; ENST00000466315/Downstream/16855;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/11440, chr22-CpG: 47/Downstream/17014
Nearby gene
TPST2
Upstream sequence
CTCTGAACATCCAGGGTCTTCACAGATGGACTTCTCATAAAAGGTAACTCCTGGAACCAGACATAAATTTTTTTTTTGGGGTGTGTGGTGATGGGATACA
Downstream sequence
TAGCTGTCGCCAGATTCTCAAAGGGACAGTGTCACACTTAACAGAGCAAGGAGAGTAATCGGTGATTGGTGAATGATCATTTATCAGAGACTGTGTGTCA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate