Basic Information
VIS ID
TVIS10019397
Fusion event
HBV-chr22 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr22
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
30838165/30442178 (Hg38)
End
30838165/30442178 (Hg38)
Fragile sites / regions
FRA22B
Nearest miRNA
hsa-mir-1286/Upstream/435065; hsa-let-7a-3/Downstream/289379;
Nearest TSS
ENST00000624155/Upstream/6634; ENST00000628773/Downstream/28399;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/16156, chr22-CpG: 38/Downstream/63077
Nearby gene
MTFP1
Upstream sequence
CATAAgctgagtgtgatggctcacgcctgtaatcccaacactttgggaggccaaggcaggtggatcacctgaggtcaggagtttgagaccagccaagcca
Downstream sequence
acatggagaaaccctgtctctattataaacacacaaaaaattacccaagcacggtggtgtgtgcctgtaatcccagctactcaggaggctgagggaagag
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate