Basic Information
VIS ID
TVIS10019401
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
247279144/247115842 (Hg38)
End
247280168/247116866 (Hg38)
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/3769587; hsa-mir-3124/Downstream/85101;
Nearest TSS
ENST00000473358/Upstream/3425; ENST00000474792/Downstream/33084;
Nearest CpG islands
chr1-CpG: 17/Target, None/Upstream, None/Downstream
Nearby gene
C1orf229
Upstream sequence
gaagaaaataagagattattgtaagaaattaaatgcaatggagaaaagaaaaagagaaagtcaacaaactaaagctggttctttaaaaattgaacgtgca
Downstream sequence
CACGGGGAGGGGGCGTGTCCCTGTGGGAGGGTGACAGCAAGGTCATCACGGGGAGGGGGCGTGTCCCTGTGGGGGGGTGACAGCAAGGTCATCACGGGGA
Target sequence
GGCGTCATCCCCTGAGAGGTGGGCATATGTCCCTGTGGGCGGGTGACAGCAAGGTCATCACGGGGAGGGGGCGTGTCCCTGTGGGCGGGTGACAGCAAGGTCATCACGGGGAGGGGGCGTGTCCCTGTGGGCGGGTGACAGCAAGGTCATCACGGGGAGGGGGCGTGTCCCTGTGGGCGGGTGACAGCAAGGTCATCACGGGGAGGGGGCGTGTCCCTGTGGGAGGGTGACAGCAAGGTCATCACGGGGAGGGGG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate