TRIML2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019406
Fusion event
HBV-TRIML2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
189028263/188107109 (Hg38)
End
189028263/188107109 (Hg38)
Location type
Intronic
Target gene
TRIML2
miRNAs that regulate target gene
hsa-mir-5096 ; hsa-mir-1273e ; hsa-mir-203a-3p ; hsa-mir-636 ; hsa-mir-1909-5p ; hsa-mir-520f-3p ; hsa-mir-302c-3p
Nearest miRNA
hsa-mir-12113/Upstream/3168669;
Nearest TSS
ENST00000502981/Upstream/1070; ENST00000512233/Downstream/2494;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/230, chr4-CpG: 33/Downstream/52585
Nearby gene
TRIML2
Upstream sequence
TCAAAGGAAAATGATAGCCCCTTTTACACTGAGACTTGAATGTGATGTTGAAGCATTTTGAAAAAATGTCAAAAACAGTGGGTCCAAAATGCCGACAAGG
Downstream sequence
gttcaaccgactctcctgcctcagcctcccgagtagctgggactacaggcgcgtgaaaccacacccagctaattttttgtatttttagtagagacggggt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate