GUSBP3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019407
Fusion event
HBV-GUSBP3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
69613297/70317470 (Hg38)
End
69613386/70317559 (Hg38)
Location type
Intron3
Target gene
GUSBP3
Nearest miRNA
hsa-mir-10397/Upstream/10613767; hsa-mir-103a-1/Downstream/1851908;
Nearest TSS
ENST00000502646/Upstream/246806; ENST00000602697/Downstream/132077;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/267476, chr5-CpG: 39/Downstream/97570
Upstream sequence
acgtatcccatggaggtggcagttttgactcagcgtaattcccttgagatgcctgcaggctttataaacggcatgttcctcttcactgtgaggaactgtc
Downstream sequence
TGTAGGATGCAGTTCAGTTTCAATTTGGAGCTGTTACCTCCCCAGGCAAAGCTGCCACACAGATGATCCAGGCTTGGTGTTTTTCCCGAGAGCCACCTGC
Target sequence
aaaaaaaaaaaaaaaaaaaTTCCCTTTTTTTTAAACCTACCACTCACACCACATGCACTGATCACTCTCATCACTGCTTTGGTAAAGCA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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