Basic Information
VIS ID
TVIS10019409
Fusion event
HBV-LOC105375416 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
97046748/97417436 (Hg38)
End
97046837/97417525 (Hg38)
Location type
Intronic
Target gene
LOC105375416
Nearest miRNA
hsa-mir-10525/Upstream/1197680; hsa-mir-10399/Downstream/546133;
Nearest TSS
ENST00000635602/Upstream/274755; ENST00000495916/Downstream/314383;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/299558, chr7-CpG: 137/Downstream/314295
Nearby gene
SDHAF3
Upstream sequence
GGCCtatattagtttcatgtggctgctgtaacaaattaccacaaactgggtggcttaaaacagaaatttattctcccacagttctgcaggccagaaatct
Downstream sequence
CAGCTTTATCAACCAGCCTTGACTCACACTTAGAGGTCAGGATATAGTTTTATGGCCGATCAACTGTCTTTCCCTCTTCTCACCCTTTTCAAATGAATAG
Target sequence
aaaaaaaaaaaaaaaaaaaaaGGGGGGTTTTGATCAGCCAGTCACACCAAAGAGCAGTATTAAACCTGTTTATTACTGAAGTATGAATT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate