Basic Information
VIS ID
TVIS10019410
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
66451373/66057593 (Hg38)
End
66451462/66057682 (Hg38)
Nearest miRNA
hsa-let-7i/Upstream/33867; hsa-mir-1178/Downstream/193400;
Nearest TSS
ENST00000382841/Upstream/26527; ENST00000510317/Downstream/73020;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/231192, chr12-CpG: 30/Downstream/73002
Nearby gene
MIR6074
Upstream sequence
AGTGAAGATTTTGATTATAAGGAAACGTGGATGTATATGTGCTTGTGTCTCTGTGTGTGTGTGTTGTTGGGGGAAGCAGGGTGCAATCAGTGATGTAAAA
Downstream sequence
gagacggagtctcactctgttgcccagactggagtacaatgctacaatcttggctcactgcaacctctgcctcccaggtgcaaacaattctcctgcctca
Target sequence
ttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate