Basic Information
VIS ID
TVIS10019412
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
10016/10016 (Hg38)
End
10105/10105 (Hg38)
Nearest miRNA
hsa-mir-1-2/Downstream/102151;
Nearest TSS
ENST00000575820/Downstream/998;
Nearest CpG islands
None/Target, None/Upstream, chr18-CpG: 67/Downstream/1603
Nearby gene
LOC102723376
Upstream sequence
CAACATGGGTCCAAGGATCCAGAACTTGACCTGAAAGGGAACAGGCAGAAGGATTCTGCCCCCAAAGGATGGGGAAGGAGGAGGAAGCCACCAAAAGGAC
Downstream sequence
aaccctaaccctaaccctaaccctaaccctaaccctaacccttaaccctaacccttaaccctaaccctaaccctaaccctaaccctaaccctaaccctaa
Target sequence
aacccttacccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaccctaaccctaaccctaccctaaccct
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate