Basic Information
VIS ID
TVIS10019415
Fusion event
HBV-chr19 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
59118895/58607528 (Hg38)
End
59118984/58607616 (Hg38)
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/57152;
Nearest TSS
ENST00000633603/Upstream/8173;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/25622, None/Downstream
Nearby gene
CENPBD1P1
Upstream sequence
aacacaaagaagaaaacaacagacgctggggtctacttgagggtagagagtgggaggaaggagaagactagaaaaaatagctattgggggctgggcacag
Downstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
gttagggtttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttN
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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