Basic Information
VIS ID
TVIS10019416
Fusion event
HBV-LINC01285 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chrX
Cytoband
q24
Reference genome
GRCh37/hg19
Start
118015438/118881475 (Hg38)
End
118015438/118881475 (Hg38)
Location type
Intron6
Target gene
LINC01285
Nearest miRNA
hsa-let-7f-2/Upstream/495004; hsa-mir-105-1/Downstream/765263;
Nearest TSS
ENST00000429181/Upstream/41844; ENST00000371628/Downstream/93139;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2159, chrX-CpG: 38/Downstream/92031
Upstream sequence
caatctccagatctgggagcaaataaaattttgttactgaacccatgaagtctatagcactttgttggtagcttaagcagactactacaCCATGTCTTCC
Downstream sequence
aggttcaagcgattctcgtgcctcagcctcctgagtagctgggattacaggctcctgccaccacgcctggctgatttttgtatttttagtagagacgggg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate