Basic Information
VIS ID
TVIS10019417
Fusion event
HBV-chrY integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chrY
Cytoband
q12
Reference genome
GRCh37/hg19
Start
59363345/57217194 (Hg38)
End
59363434/57217283 (Hg38)
Nearest miRNA
hsa-mir-12120/Upstream/43737928;
Nearest TSS
ENST00000430575/Upstream/31488704;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/13771, None/Downstream
Nearby gene
DDX11L16
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Downstream sequence
aggggttaggggttagggttagggttagggttagggtgtggtgtgtgggtgtgtgtgggtgtggtgtgtgtgggtgtggtgtgtgggtgtgggtgtgggt
Target sequence
tagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttaggggttaggggttaggggttaggggtt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate