FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019424
Fusion event
HBV-FN1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
216261859/215397136 (Hg38)
Location type
Exon24
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1638977; hsa-mir-1244-1/Downstream/2503377;
Upstream sequence
CAGAGGAGACACTATTCCCCTCTCTTCCTATTTGGCTTATAAATCACAATTCACACCAGTCCTGTGGCTACTTGTATATCTTTATCTGTCTGCTTTGCTT
Downstream sequence
CTGGGGTGGTGCTCCTCTCCCAGGAGACTGTGAGCACTCCAGTGTCAGGGTTTGCCTCCAGATGCAAGTTTGTTGGTGGAGACAATGCTATGCAGAAAGA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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