VISDB Viral Integration Site DataBase

VIS ID

TVIS10019425

Fusion event

HBV-RPL37A integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

217364753/216500030 (Hg38)

Location type

Intron1

Target gene

miRNAs that regulate target gene

hsa-mir-106b-3p ; hsa-mir-766-3p ; hsa-mir-615-3p ; hsa-mir-99a-5p ; hsa-mir-31-5p ; hsa-mir-219b-5p ; hsa-mir-1295b-3p ; hsa-mir-5704 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4717-5p ; hsa-mir-15a-3p ; hsa-mir-7977 ; hsa-mir-6821-5p ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-585-3p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4708-3p ; hsa-mir-4486 ; hsa-mir-342-3p ; hsa-mir-1228-3p ; hsa-mir-7150 ; hsa-mir-340-5p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6081 ; hsa-mir-4722-5p ; hsa-mir-4771 ; hsa-mir-4468 ; hsa-mir-6868-5p ; hsa-mir-499b-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-1285-5p ; hsa-mir-3163

Nearest miRNA

hsa-mir-10b/Upstream/2741109; hsa-mir-1244-1/Downstream/1400483;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/165, chr2-CpG: 101/Downstream/133020

Upstream sequence

AAGCttttttttttttttttttttttttGCCAGTCTGGTAATGACTAAAATGTATACAGGGTTTTAGATGCTCATTCCAAACTTGGTCCATTCAGCTACA

Downstream sequence

AGTGAGTCTAGTTCCTTGTGGTATTTGGAAGTGTGTGGACCACATAGGCCCAAATTCCAGGTTGCTGCTGGATGGGCTAGTTTTAACACTTTCTCAGGAC

Target sequence

GGCCAAACGTACCAAGAAAGTCGGGATCGTCGGTAAATACGGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAAAATTGAAATCAGCCAGCACGCCAAGTACACTTGCTCTTTCTGTGGCAAAGTAAGTAAGGCAAAGTCTCTGGTGAGAGGAGAGGGAGGGCAGGTTTCTTACCCAAGTGAGGCCTGACTTCAAGGTATTTTATAAGCCGTGTGCTGGTGGGCAGTTGGAATTACTCATACCGTTGA