ITIH4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019426
Fusion event
HBV-ITIH4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
52854646/52820630 (Hg38)
End
52855146/52821130 (Hg38)
Location type
Exon12
Target gene
ITIH4
miRNAs that regulate target gene
hsa-mir-375
Nearest miRNA
hsa-let-7g/Upstream/526322; hsa-mir-12124/Downstream/25333;
Nearest TSS
ENST00000440867/Upstream/729; ENST00000478366/Downstream/2270;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/49518, chr3-CpG: 72/Downstream/76080
Upstream sequence
ggttttggccagcttctttacttgcaacctgttttatcagcaaggtctttatgacctgtatcttgtgctgacctcctatcttatcctgtgacttagaatg
Downstream sequence
CTGGAAAGAGGGGCCCAGCCAGGGCAGGAGCAGTGAGGGCCGGACATCTGCATCTGCCTGGCACTTCTGAGCTCTTCCATGATTGGGGCTGGGGCAGGTC
Target sequence
CGCCTTCCATGGGCTTCTCAGCAACTTGAGACTGCTCTTGGTCATCGGGTTTGGTGACTACCATAGATGTGAGAGGCGTGACAAAGCTGTAGGCAAGTGATAAATTCAGCGCTTGGTTCCGGAGGGCCTGCTGATCAGCATCGGATGCGGAGACACTGTAGGTGGAGCACATCAGAGCTCAGGAGATCCTTGAATTCGGGAACAGATTTTCCATCCAGCCCCTTCTGGGGAGGTCCCTCTGGGAGAATCTGGAGC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate