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VISDB
Viral Integration Site DataBase
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TVIS10019433
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019433
Fusion event
HBV-CLU integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
27466453/27608936 (Hg38)
End
27466453/27608936 (Hg38)
Location type
Intron6
Target gene
CLU
miRNAs that regulate target gene
hsa-mir-425-5p
;
hsa-mir-18a-3p
;
hsa-mir-17-5p
;
hsa-mir-21-5p
;
hsa-mir-1228-5p
;
hsa-mir-1237-5p
;
hsa-mir-1254
;
hsa-mir-1275
;
hsa-mir-1286
;
hsa-mir-15a-5p
;
hsa-mir-15b-5p
;
hsa-mir-16-5p
;
hsa-mir-195-5p
;
hsa-mir-2467-3p
;
hsa-mir-25-5p
;
hsa-mir-2861
;
hsa-mir-3116
;
hsa-mir-3152-3p
;
hsa-mir-3175
;
hsa-mir-3191-5p
;
hsa-mir-326
;
hsa-mir-330-5p
;
hsa-mir-3612
;
hsa-mir-3659
;
hsa-mir-3678-3p
;
hsa-mir-424-5p
;
hsa-mir-4254
;
hsa-mir-4259
;
hsa-mir-4443
;
hsa-mir-4486
;
hsa-mir-4488
;
hsa-mir-4505
;
hsa-mir-4661-3p
;
hsa-mir-4665-5p
;
hsa-mir-4697-5p
;
hsa-mir-4706
;
hsa-mir-4722-5p
;
hsa-mir-4731-5p
;
hsa-mir-4749-5p
;
hsa-mir-4781-5p
;
hsa-mir-485-5p
;
hsa-mir-497-5p
;
hsa-mir-518c-5p
;
hsa-mir-520a-5p
;
hsa-mir-525-5p
;
hsa-mir-5586-3p
;
hsa-mir-571
;
hsa-mir-5787
;
hsa-mir-650
;
hsa-mir-6731-5p
;
hsa-mir-6751-5p
;
hsa-mir-6764-3p
;
hsa-mir-6777-5p
;
hsa-mir-6803-5p
;
hsa-mir-6817-3p
;
hsa-mir-6824-3p
;
hsa-mir-6838-5p
;
hsa-mir-6846-5p
;
hsa-mir-6848-5p
;
hsa-mir-6873-3p
;
hsa-mir-6884-5p
;
hsa-mir-6889-5p
;
hsa-mir-7109-5p
;
hsa-mir-7110-3p
;
hsa-mir-7855-5p
;
hsa-mir-8085
;
hsa-mir-873-5p
;
hsa-mir-890
;
hsa-mir-922
Nearest miRNA
hsa-mir-124-1/Upstream/175502; hsa-mir-10400/Downstream/1665;
Nearest TSS
ENST00000518652/Upstream/3597;
ENST00000301904/Downstream/2269;
Nearest CpG islands
None/Target,
chr8-CpG: 109/Upstream/16390
,
chr8-CpG: 46/Downstream/5501
Nearest cancer related gene
CLU
(TSG, No orient, 0)
Upstream sequence
TCAATGTACATTATTAAAAGATATAATACAGGTTCATGTTCTACGCAGAACTAAACTTTTTCAAAAAAAGTATTTTATCAATAACTAGATTACATGTGGA
Downstream sequence
CCTCTTTCTTCTTCTTGGCTTCTTCTAGGTTGCTGAGCAGTGTCTTGCGCTCTTCGTTTGTTTTTTCTATGAGAGTCTTTATCTGTTTCACCCCGTTGAC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Sample Information
×
Sample name
22T
Sample type
Tumor
Gender
Female
CpG Island Information
×
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