VISDB Viral Integration Site DataBase

VIS ID

TVIS10019434

Fusion event

HBV-chr8 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr8

Cytoband

p21.1

Reference genome

Start

End

27468117/27610600 (Hg38)

Location type

Exonic

Target gene

CLU ; MIR6843

miRNAs that regulate target gene

hsa-mir-425-5p ; hsa-mir-18a-3p ; hsa-mir-17-5p ; hsa-mir-21-5p ; hsa-mir-1228-5p ; hsa-mir-1237-5p ; hsa-mir-1254 ; hsa-mir-1275 ; hsa-mir-1286 ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-2467-3p ; hsa-mir-25-5p ; hsa-mir-2861 ; hsa-mir-3116 ; hsa-mir-3152-3p ; hsa-mir-3175 ; hsa-mir-3191-5p ; hsa-mir-326 ; hsa-mir-330-5p ; hsa-mir-3612 ; hsa-mir-3659 ; hsa-mir-3678-3p ; hsa-mir-424-5p ; hsa-mir-4254 ; hsa-mir-4259 ; hsa-mir-4443 ; hsa-mir-4486 ; hsa-mir-4488 ; hsa-mir-4505 ; hsa-mir-4661-3p ; hsa-mir-4665-5p ; hsa-mir-4697-5p ; hsa-mir-4706 ; hsa-mir-4722-5p ; hsa-mir-4731-5p ; hsa-mir-4749-5p ; hsa-mir-4781-5p ; hsa-mir-485-5p ; hsa-mir-497-5p ; hsa-mir-518c-5p ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-5586-3p ; hsa-mir-571 ; hsa-mir-5787 ; hsa-mir-650 ; hsa-mir-6731-5p ; hsa-mir-6751-5p ; hsa-mir-6764-3p ; hsa-mir-6777-5p ; hsa-mir-6803-5p ; hsa-mir-6817-3p ; hsa-mir-6824-3p ; hsa-mir-6838-5p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6873-3p ; hsa-mir-6884-5p ; hsa-mir-6889-5p ; hsa-mir-7109-5p ; hsa-mir-7110-3p ; hsa-mir-7855-5p ; hsa-mir-8085 ; hsa-mir-873-5p ; hsa-mir-890 ; hsa-mir-922

Nearest miRNA

hsa-mir-124-1/Upstream/177166; hsa-mir-10400/Downstream/1;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/18054, chr8-CpG: 46/Downstream/3837

Nearest cancer related gene

CLU(TSG, No orient, 0)

Upstream sequence

TGTTGTTGCCACTTTTCATCTTTTAATCATCTGAAATAATCCATTTCTGTTTCAAGATTACCAGCCTTACACATTTTTTATAGTACATTCTTATTGAGTT

Downstream sequence

CTGCAGAGAACAGGAGACCATCATGGGAACAGCTAGACAGCCTGCTGGCGTCCCGCCCACCTGCTGCCTGCAGCAGCTCCCCAGGGCCTCACTGCCCTCA