SNTG1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019435
Fusion event
HBV-SNTG1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
50926034/50013474 (Hg38)
End
50926034/50013474 (Hg38)
Location type
Intron1
Target gene
SNTG1
miRNAs that regulate target gene
hsa-mir-2681-5p ; hsa-mir-548c-3p ; hsa-mir-7977 ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-3671 ; hsa-mir-6849-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p
Nearest miRNA
hsa-mir-124-1/Upstream/7117199; hsa-mir-10400/Downstream/11701314;
Nearest TSS
ENST00000518652/Upstream/101298; ENST00000647273/Downstream/150657;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/103174, chr8-CpG: 98/Downstream/1395128
Upstream sequence
AGCGGTGAGGTAACTTAATCCAGAAAATCTCCTGGCTTTTCTTTGAACCATGATCAACAAATTCTGGTAATTATAATTTAGGCAATTCATGTACTTAGAT
Downstream sequence
atagatagatagatagatagatagatagatagaGATATATATGTATGTGCACatatatacatatatatatacatatatatGGCTCTCTGTGACAGTAACT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate