PLIN2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019438
Fusion event
HBV-PLIN2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
19116648/19116650 (Hg38)
End
19116648/19116650 (Hg38)
Location type
Intron1
Target gene
PLIN2
miRNAs that regulate target gene
hsa-mir-148a-5p ; hsa-mir-30a-5p
Nearest miRNA
hsa-mir-101-2/Upstream/543271; hsa-let-7a-1/Downstream/1294498;
Nearest TSS
ENST00000422679/Upstream/13531; ENST00000602708/Downstream/1796;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/13538, chr9-CpG: 73/Downstream/10531
Upstream sequence
CTGACTTCCCACCATGTGATGCAATGATCATCTTGCTGGATTTCTGTGATGAGAGAGGGATGCTGTGGTATAGAATAAACATGGAAATGGGTCTTGGGAA
Downstream sequence
ttgagtacaaagcttgagggcatgcacttgggaagcacagatttcaaagaatggaaatcaatgctttgaaatataaaggtttggggtcatttatatagac
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate