Basic Information
VIS ID
TVIS10019443
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
32053385/31764457 (Hg38)
End
32053416/31764488 (Hg38)
Nearest miRNA
hsa-mir-1265/Upstream/1395792; hsa-mir-107/Downstream/3315110;
Nearest TSS
ENST00000439456/Upstream/57069; ENST00000628416/Downstream/44063;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/3962, chr10-CpG: 16/Downstream/163485
Nearby gene
ARHGAP12
Upstream sequence
tccgaggacctgagttcagatctgcctccaccacttaatagattctctgtgactattaagccctgtgactttgggtgaatcccttcttttcctgacattc
Downstream sequence
caaatacctaatgcatgtgggcttaaaacctaggtgatgggttgataggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcatgtt
Target sequence
gtggggggcaaggggagggagagcattagga
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate