Basic Information
VIS ID
TVIS10019444
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
38806341/38517413 (Hg38)
End
38806430/38517502 (Hg38)
Nearest miRNA
hsa-mir-1265/Upstream/2876161; hsa-mir-107/Downstream/4480061;
Nearest TSS
ENST00000439456/Upstream/64232; ENST00000442306/Downstream/3667837;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/66637, chr10-CpG: 103/Downstream/82753
Nearby gene
LINC00999
Upstream sequence
CGTTCTGCTGGGGTGTTGCCACTCCAATCACTTACCAAGTTTCCCTAATCGAGAAGAGGAAAGGACAGTTGCACCACACTGTGCCCAAAGTATCCTTTAT
Downstream sequence
aatggaatggactcgaatgaaatggaatggactcgaatggaatggaatcgactcgagtggaatggaatggaatggaattgaacggactcaaatgaaatgg
Target sequence
atggaatggagtgaaatggaatggaatggaatggaatggagtggaattgaatggaatggaatgaagtggactcgaatggaatcgaattg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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