VISDB Viral Integration Site DataBase

VIS ID

TVIS10019445

Fusion event

HBV-RPS24 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr10

Cytoband

q22.3

Reference genome

Start

End

79795176/78035418 (Hg38)

Location type

Intron1

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-128-3p ; hsa-mir-27b-3p ; hsa-mir-221-3p ; hsa-mir-92a-3p ; hsa-mir-27a-3p ; hsa-mir-26a-5p ; hsa-mir-16-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-216a-3p ; hsa-mir-588 ; hsa-mir-3677-5p ; hsa-mir-3681-3p ; hsa-mir-4668-3p ; hsa-mir-4701-5p ; hsa-mir-5693 ; hsa-mir-4677-5p ; hsa-mir-877-5p ; hsa-mir-3152-3p ; hsa-mir-4694-5p ; hsa-mir-4451 ; hsa-mir-6721-5p ; hsa-mir-609 ; hsa-mir-4736 ; hsa-mir-6804-5p ; hsa-mir-3616-3p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4779 ; hsa-mir-4436b-3p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-7974 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-140-3p ; hsa-mir-4317 ; hsa-mir-3065-3p ; hsa-mir-33a-3p ; hsa-mir-409-3p ; hsa-mir-483-3p ; hsa-mir-6828-5p ; hsa-mir-4766-3p ; hsa-mir-145-3p ; hsa-mir-10b-3p ; hsa-mir-3973 ; hsa-mir-451b ; hsa-mir-4477a ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-1265/Upstream/2482797; hsa-mir-107/Downstream/8229276;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/1156, chr10-CpG: 73/Downstream/267605

Upstream sequence

CCTCCCTTCCTCAGCCCATTAGGTTAAACACCAAAGAAAGACTGGTGTGTACTGAATAGGAAAGGGAAGTTTTATTTGGAACCTTCTAAGAGGAAATCAA

Downstream sequence

TAAGGAAGGGCACATCAATCTTTGCTTAATTGTCCTTTACTCTAAAGATGTATTTTATCATACTGAATGCTAAACTTGATATCTCCTTTTAGGTCATTGA

Target sequence

GAACGACACCGTAACTATCCGCACTAGAAAGTTCATGACCAACCGACTACTTCAGAGGAAACAAATGG