VISDB Viral Integration Site DataBase

VIS ID

TVIS10019446

Fusion event

HBV-EIF4G2 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr11

Cytoband

p15.4

Reference genome

Start

End

10821098/10799551 (Hg38)

Location type

Exon4

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7d-5p ; hsa-let-7b-5p ; hsa-mir-1229-3p ; hsa-mir-151a-5p ; hsa-mir-421 ; hsa-mir-484 ; hsa-mir-424-5p ; hsa-mir-331-3p ; hsa-mir-186-5p ; hsa-mir-106a-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-3607-3p ; hsa-mir-5680 ; hsa-mir-6504-3p ; hsa-mir-106b-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4650-3p ; hsa-mir-520g-5p ; hsa-mir-885-5p ; hsa-mir-4742-5p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-28-3p ; hsa-mir-548al ; hsa-mir-4445-3p ; hsa-mir-4438 ; hsa-let-7e-5p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-4458 ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-let-7f-5p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-3658 ; hsa-mir-3686 ; hsa-mir-3653-3p ; hsa-mir-4275 ; hsa-mir-6507-5p ; hsa-mir-101-3p ; hsa-mir-582-5p ; hsa-mir-194-5p ; hsa-mir-585-5p ; hsa-mir-4668-3p ; hsa-mir-3161 ; hsa-mir-599 ; hsa-mir-562 ; hsa-mir-411-5p ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-196a-3p

Nearest miRNA

hsa-mir-210/Upstream/291225; hsa-let-7a-2/Downstream/857100;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/48009, chr11-CpG: 147/Downstream/8263

Upstream sequence

GCCCCTCGTCACCCAGACGGACATCGTGAAAGCCATCGCCCGCCTCATTGAGTTCTATAAGCACGAGAGCTGTGGCCAGTGTACCCCATGCCGTGAGGGT

Downstream sequence

ttattggaacacaaccatgctcattcatttatgtgttatctatggctgccttcatgatacaacaacagttgaatagttgtggcacagattgtacagcaca