C1R _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019447
Fusion event
HBV-C1R integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
7244275/7091679 (Hg38)
End
7244275/7091679 (Hg38)
Location type
Exon8
Target gene
C1R
miRNAs that regulate target gene
hsa-mir-3692-3p ; hsa-mir-3191-5p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-518c-5p ; hsa-mir-6817-3p
Nearest miRNA
hsa-mir-141/Upstream/127488; hsa-let-7i/Downstream/2147788;
Nearest TSS
ENST00000382841/Upstream/1321; ENST00000536679/Downstream/212;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/72627, chr12-CpG: 64/Downstream/97799
Upstream sequence
TCTTGGAAAGTACGGGAAATAACAGAAAAAAGTAATGATTATTCGGGTATGTTCTCCAGTGGTACAGAAGGATGAGAGGATGAGAGAGTTTATTTCAACT
Downstream sequence
CCTGAAGACTCTCCTACGAACTATGATAGTAAATGAtggagaggccctagggtttgggatcaaacaattctggtttgagcacgcaccccgccccacaatc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate