VISDB Viral Integration Site DataBase

VIS ID

TVIS10019449

Fusion event

HBV-SRGAP1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr12

Cytoband

q14.2

Reference genome

Start

End

64450321/64056541 (Hg38)

Location type

Intron6

Target gene

miRNAs that regulate target gene

hsa-mir-145-5p ; hsa-mir-214-3p ; hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-744-5p ; hsa-mir-92b-5p ; hsa-mir-181a-5p ; hsa-mir-1273e ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-8082 ; hsa-mir-6086 ; hsa-mir-4534 ; hsa-mir-377-5p ; hsa-mir-219b-3p ; hsa-mir-3664-3p ; hsa-mir-6746-5p ; hsa-mir-1247-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4802-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-302f ; hsa-mir-1273f ; hsa-mir-4768-3p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-7856-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-8074 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-1250-3p ; hsa-mir-1306-5p ; hsa-mir-3161 ; hsa-mir-7843-3p ; hsa-mir-203a-3p ; hsa-mir-4448 ; hsa-mir-4786-3p ; hsa-mir-4293 ; hsa-mir-6796-3p ; hsa-mir-99b-3p ; hsa-mir-99a-3p

Nearest miRNA

hsa-let-7i/Upstream/232814; hsa-mir-1178/Downstream/565968;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/211920, chr12-CpG: 54/Downstream/165503

Upstream sequence

caggggttcaggctccttttacccttctacccagcctcccttagcatatacttcttattgtcacaagacagctgtcccatctccaacatcaagttcaaat

Downstream sequence

AAAAAGAAAATGAGAAATTCTTAAAACAAAGCCCCTtttttattgaagcaaaatccacataacataaaactagcccttctaaagtgtgcaattaagtggc