VISDB Viral Integration Site DataBase

VIS ID

TVIS10019451

Fusion event

HBV-chr12 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

122217537/121779631 (Hg38)

Location type

Exonic

Fragile sites / regions

Target gene

RHOF ; TMEM120B

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-766-3p ; hsa-mir-331-3p ; hsa-mir-30c-5p ; hsa-mir-4326 ; hsa-mir-1273g-3p ; hsa-mir-6516-5p ; hsa-mir-592 ; hsa-mir-455-3p ; hsa-mir-7703 ; hsa-mir-597-5p ; hsa-mir-668-3p ; hsa-mir-6499-3p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-5186 ; hsa-mir-4793-3p ; hsa-mir-6890-3p ; hsa-mir-508-5p ; hsa-mir-3149 ; hsa-mir-411-5p ; hsa-mir-4775 ; hsa-mir-4735-5p ; hsa-mir-590-3p ; hsa-mir-2053 ; hsa-mir-6879-3p ; hsa-mir-4524a-3p ; hsa-mir-6773-3p ; hsa-mir-215-3p ; hsa-mir-6812-3p ; hsa-mir-500b-3p ; hsa-mir-4524b-3p ; hsa-mir-1182 ; hsa-mir-6895-5p ; hsa-mir-4755-3p ; hsa-mir-342-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-5693 ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-1228-3p ; hsa-mir-5582-5p ; hsa-mir-34a-3p ; hsa-mir-7977 ; hsa-mir-4738-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3656 ; hsa-mir-3975 ; hsa-mir-383-3p ; hsa-mir-525-3p ; hsa-mir-524-3p ; hsa-mir-4674 ; hsa-mir-4437 ; hsa-mir-6778-3p ; hsa-mir-378g ; hsa-mir-6850-3p ; hsa-mir-4740-3p ; hsa-mir-22-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4767 ; hsa-mir-6087 ; hsa-mir-6089 ; hsa-mir-383-3p ; hsa-mir-129-5p ; hsa-mir-4298 ; hsa-mir-1302 ; hsa-mir-4314 ; hsa-mir-6716-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-4797-5p ; hsa-mir-194-5p ; hsa-mir-555 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-6861-5p ; hsa-mir-1245b-3p ; hsa-mir-1273e ; hsa-mir-1273f ; hsa-mir-1293 ; hsa-mir-3173-3p ; hsa-mir-323a-5p ; hsa-mir-3689d ; hsa-mir-4477b ; hsa-mir-4483 ; hsa-mir-4685-5p ; hsa-mir-5003-3p ; hsa-mir-6131 ; hsa-mir-6134 ; hsa-mir-665 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6837-5p ; hsa-mir-6840-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-6888-5p ; hsa-mir-6891-5p ; hsa-mir-143-5p ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-3165 ; hsa-mir-363-5p ; hsa-mir-4743-3p ; hsa-mir-4778-5p ; hsa-mir-484 ; hsa-mir-510-5p ; hsa-mir-5586-3p ; hsa-mir-6745 ; hsa-mir-6758-3p ; hsa-mir-6888-3p

Nearest miRNA

hsa-let-7i/Upstream/335126; hsa-mir-3612/Downstream/916276;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/66293, chr12-CpG: 132/Downstream/13366

Upstream sequence

GCCAGTAAATTTTTTAAAAGTGATTTAAAAAAATAAATACAAGCGGCCAAAACAAATAAAGGAAAGCATATCTAATCTCGCTAAAGGTAGTCAAACACAG

Downstream sequence

CAGCTCGGATCTGTTCGCAGGCGCTCAGGCCCTGGGTGGGGGGAGGAGCCAGCATTAGGTGAGGGGCCCCTGGAGGTCTCCTAGCACCACCTGGTGGGTT

Target sequence

GAGGTCTGTCTGCCCTGGGTCAGAGCAGCAGGCAGAGCCGGCGCTTCTTCTGCCGTTGCGCCTTCTTCAGAGCGCTGAGAGCCACCTTGGCGGCCTCCCGGAAGACGTCCTCCACATTCTCCCGAAACTTGGCGGAACATTCCAGGTAGAGAG