Basic Information
VIS ID
TVIS10019454
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
43774754/43305551 (Hg38)
End
43774843/43305640 (Hg38)
Nearest miRNA
hsa-mir-208a/Upstream/6353160; hsa-mir-1185-1/Downstream/4455355;
Nearest TSS
ENST00000550708/Upstream/892978; ENST00000557465/Downstream/1078905;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1698425, chr14-CpG: 22/Downstream/1581829
Nearby gene
FSCB
Upstream sequence
CTCTCTCTCTCTCTCCatatatatatgtatgtctctctccatatatatatatatgtgtgtgtatatatatatacacacacacatatacacacatatacat
Downstream sequence
TATGCTAGTTTTCGTCATAGTCTCCTTAGGTATTACCAAACTTTTTTGTATGCCATGGTTGCATttagctgaactaaggaaaagtcctgcaaccacaaaa
Target sequence
TTAGAACATGAAACTTTCCAAACAGAATATATTTGTTAATGGGTTGAAAATAAATAGAAGTGGGTAGTGGTAAGCTACTAGGTCATTAT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate