Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019456
Fusion event
HBV-BAG5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr14
Cytoband
q32.33
Reference genome
End
104023843/103557506 (Hg38)
Location type
Exon1
Target gene
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-let-7b-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-6877-5p ; hsa-mir-4767 ; hsa-mir-6087 ; hsa-mir-383-3p ; hsa-mir-127-3p
Nearest miRNA
hsa-mir-1185-1/Upstream/1017676; hsa-mir-12121/Downstream/559899;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/22601, chr14-CpG: 161/Downstream/4465
Upstream sequence
cacacaAAccccatgacacttaaacttgattggcaatggccaccactgactttcacattgccaaacccaactgactgaaaattccagcatttgacactgt
Downstream sequence
GGTACACAAACACTTGTTTGAAAAGAATGACTGAAACGTCTACTTTCAAAGAACAATGGACACTTTTAAAGGGAATGCTGACATTTAACTTTACAAAATG
Target sequence
AATCTGATCATTTCCATGACCAATTACCCATGTGAACAATTCAAAATGACGGTGGAAGAGCTGAGCACCCTGTACTCACACACGATGCCCACAGCTTGGCAAAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.