VISDB Viral Integration Site DataBase

VIS ID

TVIS10019457

Fusion event

HBV-CHD2 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr15

Cytoband

q26.1

Reference genome

Start

End

93556279/93013049 (Hg38)

Location type

Exon36

Target gene

miRNAs that regulate target gene

hsa-mir-450a-5p ; hsa-mir-196b-5p ; hsa-mir-378a-5p ; hsa-mir-218-5p

Nearest miRNA

hsa-mir-10393/Upstream/107969; hsa-mir-1302-10/Downstream/3320212;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/107851, chr15-CpG: 34/Downstream/31823

Upstream sequence

aagaccccccctcctaataccttcaccttgggggctaggatttcagcatatgaactttgaggagacatgaacattcagaccatagcaAatagtagtgtaa

Downstream sequence

gctccatgaagacagagattttatgtctctcatctactgctgtgttctcagcacatagaatggaatagaatggtgctggggacagggaagcactcaggag

Target sequence

GTAAAGTACAAATTCAGTCCTAATTCATACAAACAAATACCAATTCCACAGAAAAATCTCTTAATTTTTGTTTTTCCATGGGGAGATGATCACAGAATCATGGGTTATTGCTGGTGCTAATAGTCAAACAATAAGACCAGATGGGTGAAATAGCCAATGTATTGGAGCCTAACATGGTTGAAATTCTGACAAAGAGTGTTTACCCTGTGTTTTTAGGTCCTAAAATCATTTGTTCACCAGGTTTTTTCTTCCATT