VISDB Viral Integration Site DataBase

VIS ID

TVIS10019460

Fusion event

HBV-MAP1LC3B integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr16

Cytoband

q24.2

Reference genome

Start

End

87437219/87403613 (Hg38)

Location type

Exon4

Target gene

miRNAs that regulate target gene

hsa-mir-204-5p ; hsa-mir-335-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-30a-5p ; hsa-mir-6730-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-7150 ; hsa-mir-3926 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-212-5p ; hsa-mir-3918 ; hsa-mir-4761-5p ; hsa-mir-4512 ; hsa-mir-5010-3p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-4653-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-488-5p ; hsa-mir-6514-5p ; hsa-mir-2113 ; hsa-mir-5195-3p ; hsa-mir-3658 ; hsa-mir-145-5p ; hsa-mir-3653-3p ; hsa-mir-4524a-3p ; hsa-mir-455-3p ; hsa-mir-4495 ; hsa-mir-6507-5p ; hsa-mir-548c-3p ; hsa-mir-494-3p

Nearest miRNA

hsa-mir-12128/Upstream/1484818; hsa-mir-11401/Downstream/430979;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/10163, chr16-CpG: 23/Downstream/4168

Upstream sequence

gttttgtaaggattaagaaataactcatgtgagtgagtcagtgttttgcaagaaagccgccttggcgcagtgaaggtgaaggccagcgcactccctggct

Downstream sequence

CAAACGCAGGGTAAACGGGCTGTGTGAGAAAACGGCCCTGACTGTAAACTGCTGAAGGTCCCTGACTCCTAAGAGAACCACACCCAAAGTCCTCACTCTT

Target sequence

AAGTTGTGTTTGTGTTTCAAGCAGAAAAACTGAGCTCCAAGTGAGCACATTCAGCTTTGGAAACTATATTATTTAATGTAGGCTAGCTTGTTTTCAAATTTTAAAAGTTTAAAAATAAAATACTTTGCATTCTAAGTTGCCAATAAAATAGACCTTCAAGTTATTTTAATGCTCTTTTCTCACTAATAGGAACTTGTAATTCCAGCAGTAATTTAAAGGCTTTCAGAGAGACCCTGAGTCTTCTCTTCAGGTTCA