ASPSCR1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019461
Fusion event
HBV-ASPSCR1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
79968675/82010799 (Hg38)
End
79968743/82010867 (Hg38)
Location type
Intron9
Target gene
ASPSCR1
miRNAs that regulate target gene
hsa-let-7b-5p
Nearest miRNA
hsa-mir-10226/Upstream/316930; hsa-mir-4525/Downstream/225801;
Nearest TSS
ENST00000595228/Upstream/1313; ENST00000585140/Downstream/1217;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/1537, chr17-CpG: 128/Downstream/11456
Nearest cancer related gene
ASPSCR1(OG, No orient, 0)
Upstream sequence
ctcctgacTGCCTTTCTCTACTTTTCCTAACCTCCAGCCTAGGTCTAGTTTTAGTATTAACTTCTAATATATATTCCTAAATTACTTCTTGACTAGCTTA
Downstream sequence
GGTGGGCAGCGCTGTGGGGTGTCCGGGGATGGGGGGCAGGGGCCCATGGGGCCTCTCCCGGCTCCTTCCTTCCAGGCCACAGGACTGCAGCCACCTGGCC
Target sequence
AGGTGGCTCTGAGGGTCCTGTTCCCCGACCGCTACGTCCTACAGGGCTTCTTCCGCCCCAGCGAGACA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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