VISDB Viral Integration Site DataBase

VIS ID

TVIS10019463

Fusion event

HBV-C3 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

6697806/6697795 (Hg38)

Location type

Exon20

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-6516-5p ; hsa-mir-550b-2-5p ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-1227-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-6851-5p ; hsa-mir-4252 ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-1247-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6889-3p ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-5001-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-661 ; hsa-mir-4486 ; hsa-mir-4522 ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-939-3p ; hsa-mir-4432 ; hsa-mir-589-3p ; hsa-mir-5698 ; hsa-mir-6722-5p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-1306-5p ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-4532 ; hsa-mir-6890-3p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-1273e ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-6787-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-302f ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-7703 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-127-5p ; hsa-mir-1297 ; hsa-mir-25-5p ; hsa-mir-26a-5p ; hsa-mir-3192-5p ; hsa-mir-3199 ; hsa-mir-320e ; hsa-mir-365a-5p ; hsa-mir-365b-5p ; hsa-mir-3928-5p ; hsa-mir-4459 ; hsa-mir-4465 ; hsa-mir-4635 ; hsa-mir-513c-5p ; hsa-mir-514b-5p ; hsa-mir-552-3p ; hsa-mir-562 ; hsa-mir-5697 ; hsa-mir-6087 ; hsa-mir-658 ; hsa-mir-6806-3p ; hsa-mir-6819-3p ; hsa-mir-6877-3p ; hsa-mir-7843-3p ; hsa-mir-8052

Nearest miRNA

hsa-mir-1227/Upstream/280081; hsa-let-7e/Downstream/38917;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/36509, chr19-CpG: 39/Downstream/9306

Upstream sequence

GCTGCCCAGCCAAGCTTGACTCCAGCCTGCTGGAGTCTGGGTGGGGGATGGAGAGGGGTTCCCAGGCGAGCCCCAACCTATGCCTTCCAAAAGTCTTTCT

Downstream sequence

TGCTCGGGCAGAGACAGAACACGGAGTGTCAAGGTCGGGGAGTGGACAAGGCCAGGCTCCTGGGTCTCAGCTCTTAGTCCACTCCGCAGGAGCTCTCCCT

Target sequence

CACGGCCCAGGCGTTCTGGATCCAGGGTGCGAACAGCCACAGTTTTGTTCATTCTGATTCCTTCCGGCTACGCAGTGTTAGAGGTGGGGGGAGTCGTTGGATGAATAAAAGAACAGACAGACACACAGATGGTCAGCAGGGCACTGTCCTTAGGATCACCCTAGCATTgccgggcgcggtggctcgtgcctgtgatcctagcactttgggaggccgaggtgggtggatcacgaggtcagaagatcgagaccatcc