VISDB Viral Integration Site DataBase

VIS ID

TVIS10019465

Fusion event

HBV-APOE integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr19

Cytoband

q13.32

Reference genome

Start

End

45412650/44909393 (Hg38)

Location type

Intron3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-199a-5p ; hsa-mir-1908-5p ; hsa-mir-199a-3p

Nearest miRNA

hsa-mir-10395/Upstream/149809; hsa-let-7e/Downstream/527261;

Nearest TSS

Nearest CpG islands

chr19-CpG: 90/Target, None/Upstream, None/Downstream

Upstream sequence

cgttctgttcagcacagacctggggggttagggttaggggtgccgttggggttggggttggggttagggttaggggttagggttagggttagggtttagg

Downstream sequence

TCTGCTGGCCTCCCCCTGTGATTTCCTCTAAGCCCCAGCCTCAGTTTCTCTTTCTGCCCACATACTGGCCACACAATTCTCAGCCCCCTCCTCTCCATCT

Target sequence

AGGGCGCTGATGGACGAGACCATGAAGGAGTTGAAGGCCTACAAATCGGAACTGGAGGAACAACTGACCCCGGTGGCGGAGGAGACGCGGGCACGGCTGTCCAAGGAGCTGCAGGCGGCGCAGGCCCGGCTGGGCGCGGACATGGAGGACGTGTGCGGCCGCCTGGTGCAGTACCGCGGCGAGGTGCAGGCCATGCTCGGCCAGAGCACCGAGGAGCTGCGGGTGCGCCTCGCCTCCCACCTGCGCAAGCTGCGT