Basic Information
VIS ID
TVIS10019466
Fusion event
HBV-chr20 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr20
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
55267138/56692082 (Hg38)
End
55267157/56692101 (Hg38)
Nearest miRNA
hsa-mir-103a-2/Upstream/2623597; hsa-mir-1-1/Downstream/629401;
Nearest TSS
ENST00000382410/Upstream/61848; ENST00000458293/Downstream/38296;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/60349, chr20-CpG: 92/Downstream/232824
Nearby gene
TFAP2C
Upstream sequence
CTGGCACGACCTCATGAGGTTTCGAAGACTTCATGGCATTAAAATAGAAAATGTTAAAAACAAAATGTAAATATCATTGAGTTACCAcccagtgccctgt
Downstream sequence
tccataatcctgaaagctattcctataatcaatctcctcttatacgtctatatgtatcctattggctctgtttgtctggaggacactgatttgtacaatt
Target sequence
attgtgggacttctgggct
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate