Basic Information
VIS ID
TVIS10019468
Fusion event
HBV-chr21 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr21
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
10115815/9276982 (Hg38)
End
10115819/9276986 (Hg38)
Nearest miRNA
hsa-mir-10396a/Upstream/289317; hsa-let-7c/Downstream/4129398;
Nearest TSS
ENST00000624081/Upstream/258312; ENST00000624052/Downstream/48027;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/147195, chr21-CpG: 38/Downstream/48009
Nearby gene
TEKT4P2
Upstream sequence
CCCCTAGGGAAAACTACAAATGGAAAATTCATTGATTTTTGATTTTGCTTTCCTATGGATTAAATTTAACACTTTCTTGTAAATCTCTCCCTTTACAGAT
Downstream sequence
TGTGATAAATAGTTATCCAACTTTCTAGATGTCCACCCAGAGCTGCTTCCATATGAAGAGGTGGAAACGGATTCTGTGCATGATACTGGTTAGGATCGGG
Target sequence
CATA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate