Basic Information
VIS ID
TVIS10019472
Fusion event
HBV-LOC110806263 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37.55
Start
1296299/1296184 (Hg38)
End
1296306/1296191 (Hg38)
Location type
Intronic
Target gene
LOC110806263
Nearest miRNA
hsa-mir-4635/Upstream/233210; hsa-mir-10397/Downstream/13119;
Nearest TSS
ENST00000502646/Upstream/1115; ENST00000605200/Downstream/25638;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/329, chr5-CpG: 18/Downstream/38771
Nearby gene
MIR4457
Upstream sequence
GTCCTCTGACTGGTCTGCTCAGGCCCCAGAAGCGAAGGGCTTCCGTGCAGAGAGCAGTCTCCAAACCCTACCGTTACTTCTGATCATagcagctgctatc
Downstream sequence
AGGTCGGCAAACACTGAAATGCTAACAAACGCAACCTTAAATGTAACCTTTCCTACTTTCAGAAACTGCCGGAGGAAATTGCTTTATTTATGGAGCTAGC
Target sequence
GTAGCTG
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate