Basic Information
VIS ID
TVIS10019473
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37.55
Start
60876510/59963951 (Hg38)
End
60876510/59963951 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/17067676; hsa-mir-10400/Downstream/1750837;
Nearest TSS
ENST00000518652/Upstream/362547; ENST00000531077/Downstream/85636;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/843764, chr8-CpG: 14/Downstream/209615
Nearby gene
CA8
Upstream sequence
ATAAAGACTATAATGAATGAAATAATATAAAAGAAAAACAAGAAAGCCATCTAGATCTGTAATTCATAACAATTTTCACATACTCATGAAATGTTATTGT
Downstream sequence
tCACATTAAATTGAATTGAAACTGGAAGCTGGGGTAGTGGTGGGGATGGGAATATGGCATCAAACCAAGTTCTCTAATGCAGCCACAGATCAATCAGCAA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate