hsa-mir-4761-5p _LIHC.png
TRPM3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019475
Fusion event
HBV-TRPM3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
q21.12
Reference genome
GRCh37.55
Start
73891604/71276688 (Hg38)
End
73891604/71276688 (Hg38)
Location type
Intronic
Target gene
TRPM3
miRNAs that regulate target gene
hsa-mir-204-5p ; hsa-mir-4433b-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-6778-3p ; hsa-mir-532-3p ; hsa-mir-1281 ; hsa-mir-1224-3p ; hsa-mir-6814-5p ; hsa-mir-4761-5p
Nearest miRNA
hsa-mir-101-2/Upstream/466604; hsa-let-7a-1/Downstream/12693060;
Nearest TSS
ENST00000422679/Upstream/155090; ENST00000473252/Downstream/170147;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/856379, chr9-CpG: 50/Downstream/169909
Nearby gene
CEMIP2
Upstream sequence
CTCTCTCTCTCTCACCCTCCCCCTACAGatatataagtgtatatatatttgtatgtatatatatgtatatgcatatgtTTGGTGCAAGTGAGGGACCTCT
Downstream sequence
ATGATGTTCACTTTGCTCACAACAGATTCCATGGAAAGCCCAAACTGCTAGGGTATTTAGCTGACCACGAGAAATGTAACTGCCCCAATGACTCTCTATT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate