Basic Information
VIS ID
TVIS10019476
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37.55
Start
5820568/5799338 (Hg38)
End
5820572/5799342 (Hg38)
Nearest miRNA
hsa-mir-210/Upstream/1943197; hsa-let-7a-2/Downstream/1435424;
Nearest TSS
ENST00000527297/Upstream/8073; ENST00000317037/Downstream/20972;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1191038, chr11-CpG: 32/Downstream/435196
Nearby gene
OR52N1
Upstream sequence
aaaataaaaggccaacacactttaaatcaccaaccagatcaagaaatagcactctgtcagtcacccaagtccctccatgtgcctttcctcTTCCCCAAAT
Downstream sequence
AGAAGAAAGATGGAAAGCTAACCATTCTCAAAAACTGGACTAAAAAATTAGTAAAGATTTTATCCTACCCAATATAATTGTCTATAGTTATTTGGGGGCT
Target sequence
CTTC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate