Basic Information
VIS ID
TVIS10019477
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37.55
Start
1762783/1653617 (Hg38)
End
1762787/1653621 (Hg38)
Nearest miRNA
hsa-let-7i/Downstream/6694;
Nearest TSS
ENST00000382841/Upstream/8820; ENST00000540974/Downstream/34953;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/7540, chr12-CpG: 126/Downstream/7914
Nearby gene
MIR3649
Upstream sequence
aacaaacaaacaaacatgaaaaggcaaacaaacaTGAAAAGGCAAATGATAGAACTGGCCAGTTCCATTTCTAATGGCCTGAGTGGACTCATTCTAGAAt
Downstream sequence
CACAGTACTTTTCATGCTTGAAGATTATGATGAAGGAGGTGAGTaataattatagctaccatttattgagtactactgtgtaccagctgctttacataca
Target sequence
CACC
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate