Basic Information
VIS ID
TVIS10019478
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37.55
Start
43717450/43248247 (Hg38)
End
43717454/43248251 (Hg38)
Nearest miRNA
hsa-mir-208a/Upstream/6295856; hsa-mir-1185-1/Downstream/4512744;
Nearest TSS
ENST00000550708/Upstream/835674; ENST00000557465/Downstream/1136294;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1641121, chr14-CpG: 22/Downstream/1639218
Nearby gene
FSCB
Upstream sequence
GTGTCAACAGGGTTCATTGCAGGAGTAGAATAATCCGGTACAAGGAACGAGAACAGATTGAAACCAGAAACAAAGCCATGCCTGACAGTCAATCAAGGTC
Downstream sequence
gttgaattaatttttctaattaaaattattgatagaagagtattaaaaactctcactgcaacttcagattggtgcatttcttcttgacattccattagat
Target sequence
taaa
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate