Basic Information
VIS ID
TVIS10019479
Fusion event
HBV-chrY integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chrY
Cytoband
q12
Reference genome
GRCh37.55
Start
59363320/57217169 (Hg38)
End
59363320/57217169 (Hg38)
Nearest miRNA
hsa-mir-12120/Upstream/43737903;
Nearest TSS
ENST00000430575/Upstream/31488679;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/13746, None/Downstream
Nearby gene
DDX11L16
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Downstream sequence
ttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttaggggttaggggtt
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate