Basic Information
VIS ID
TVIS10019480
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
10001/10001 (Hg38)
End
10090/10090 (Hg38)
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-101-1/Downstream/7279;
Nearest TSS
ENST00000473358/Downstream/19464;
Nearest CpG islands
None/Target, None/Upstream, chr1-CpG: 111/Downstream/18645
Nearby gene
DDX11L1
Upstream sequence
GATTCAGCTTTAACAGGGTCAAATCTGTAAGGTTTATGTAAGGATGTATTAAAATTCTCTGGATGTTTTAAACATATTGTCTGAAACCAGGAGAGAATTC
Downstream sequence
taaccctaaccctaacccaaccctaaccctaaccctaaccctaaccctaaccctaacccctaaccctaaccctaaccctaaccctaacctaaccctaacc
Target sequence
aaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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