VISDB Viral Integration Site DataBase

VIS ID

TVIS10019481

Fusion event

HBV-SUMO1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr2

Cytoband

q33.1

Reference genome

Start

End

203092470/202227747 (Hg38)

Location type

Intron4

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-4276 ; hsa-mir-4474-5p ; hsa-mir-491-5p ; hsa-mir-4450 ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-205-3p ; hsa-mir-6514-5p ; hsa-mir-1296-3p ; hsa-mir-6782-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6887-5p ; hsa-mir-5010-5p ; hsa-mir-6795-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-3175 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6739-5p ; hsa-mir-6878-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6804-5p ; hsa-mir-6770-5p ; hsa-mir-3179 ; hsa-mir-5681a ; hsa-mir-3154 ; hsa-mir-8085 ; hsa-mir-6797-5p ; hsa-mir-6731-5p ; hsa-mir-1249-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6873-5p ; hsa-mir-5093 ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-202-3p ; hsa-mir-203a-3p ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-654-3p ; hsa-mir-8076 ; hsa-mir-3688-3p ; hsa-mir-5700 ; hsa-let-7e-5p ; hsa-mir-98-5p ; hsa-let-7i-5p ; hsa-let-7a-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7g-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7f-5p ; hsa-let-7b-5p ; hsa-mir-5585-3p ; hsa-mir-8068 ; hsa-mir-4424 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-3074-3p ; hsa-mir-624-5p ; hsa-mir-7150 ; hsa-mir-106a-3p ; hsa-mir-24-3p ; hsa-mir-4736 ; hsa-mir-4284 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6868-5p ; hsa-mir-211-3p ; hsa-mir-7845-5p ; hsa-mir-552-3p ; hsa-mir-6757-3p ; hsa-mir-603 ; hsa-mir-7977 ; hsa-mir-9-5p ; hsa-mir-383-3p ; hsa-mir-431-3p

Nearest miRNA

hsa-mir-10b/Upstream/13094585; hsa-mir-1244-1/Downstream/4555487;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/56123, chr2-CpG: 60/Downstream/10145

Upstream sequence

ATAACAGCTGGAACATAGGCCTTCCCTTCATTCTGTTAACCTGAGGAATAGTCATATCATTCTGCTCTCTCAGTTCTTGTTTCTTAACTTAGCAGGGAAT

Downstream sequence

tgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccatgcgtggtggtgcatgcctgtaatcccagctactagggaggctaaggcagg

Target sequence

tgggaggccagggtgggccaatcacctgaggtcaggagtttgagaccagcc