Basic Information
VIS ID
TVIS10019483
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
191040546/190119391 (Hg38)
End
191040806/190119651 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/5180951;
Nearest TSS
ENST00000502981/Upstream/54889; ENST00000616166/Downstream/54123;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/26937, chr4-CpG: 24/Downstream/53482
Nearby gene
DBET
Upstream sequence
GTGGCAATCTCCTATTTGTGCAGTGATATGACAACTACCAACTGTTTTATTCTATACAGAATGTGACTGGCTATGAAGCAGATTTGCTTTGTTTCAGTAG
Downstream sequence
gagataggcaggcgctgtaggcagaaacatgaccgctgtcagcctgcctgggatggggggaaggagcctggtaccagagtggattcggattgatcaccac
Target sequence
aatcttttacttagcttaactttaaggttaactttaaggttaaaaattaccaaaagtattttggaaactACTACTGCAgaggtacctatgcagaaagaaacaccccagaactccatttaagatgccccagtcatcattcactctgcagtaaaaatgtcacaatattgctggctacatgctgataagaaggacaaaggggacattcttaagagaaacctggcaccataagtacagagtagggtagagaaggacatt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate