Basic Information
VIS ID
TVIS10019484
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
191043771/190122616 (Hg38)
End
191043860/190122705 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/5184176;
Nearest TSS
ENST00000502981/Upstream/58114; ENST00000616166/Downstream/51069;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/30162, chr4-CpG: 24/Downstream/50428
Nearby gene
DBET
Upstream sequence
GGGGTGTGAAGGTCTGAGATATAACAACATGGAAGTACTGCCAGTAACTATAGATGCTGGGAGAAGGCCCACATCAAACTGAGTCCTCCCAGCATGCTAT
Downstream sequence
ggttagggttggggttggggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttgggttagggttggggttg
Target sequence
gggtcagggtcagggtcagggtcagggtcagggtcagggttaggggttaggggttagggtcagggttagggttagggttagggttttag
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate