Basic Information
VIS ID
TVIS10019485
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
10486/10486 (Hg38)
End
11765/11765 (Hg38)
Nearest miRNA
hsa-mir-10397/Downstream/1051131;
Nearest TSS
ENST00000502646/Downstream/80386;
Nearest CpG islands
None/Target, None/Upstream, chr5-CpG: 87/Downstream/38925
Nearby gene
PLEKHG4B
Upstream sequence
ACATCAAGGTCCAAAATTAATGGAAGCCAGAGGCCTTCCCAAGCAAGTCCTAAAGTTGTGAAGCTGATTGGTGGAAGACGAGTGCCCGTGGGGCCACTGT
Downstream sequence
taaccctaaccctaacccctaacccctaaccctaaccctaaaccctaaccctgaacccgaaccctgacccctgacccctgaccccgaccccgaccccgac
Target sequence
taaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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