Basic Information
VIS ID
TVIS10019486
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Reference genome
GRCh37/hg19
Start
159128584
End
159128673
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearby gene
VIPR2
Upstream sequence
GCCTCTTTATAGGGtgtgtatgattttgtattttacaaatccttctatagataatataaccaaattaacggtaaaaactcagtaaggtatgcaggcaact
Downstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Target sequence
ttagggttagggttagggttagggttagggttagggttagggttagggttagggtttagggttagggttagggttagggNNNNNNNNNN
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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