Basic Information
VIS ID
TVIS10019487
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
36372860/36515342 (Hg38)
End
36372949/36515431 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/6557994; hsa-mir-10400/Downstream/4755617;
Nearest TSS
ENST00000518652/Upstream/420296; ENST00000522417/Downstream/263733;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1278749, chr8-CpG: 351/Downstream/1178995
Nearby gene
KCNU1
Upstream sequence
caccacgaaggtttgcagcttcactcttgaagccagtgataccaggaacccaccgggaggaatgaacaactccgccttaagagctgtaacactcactgtg
Downstream sequence
gaggtgggaggatcacttgagcccaggaggttgaggctgcagtgagctgtgattgtgccaccgcacttcagcttgaatgacagagtgagacctcatctca
Target sequence
tcatttgttatggtagccctaggaaactaaaacGAGAACTAagccaggtgtggtggcacacacctgtcatcccagctactcaagagact
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate